Publications

Research Papers

2016 onwards

Parihar, V., Arya, D., Walia, A., Tyagi, V., Dangwal, M., Verma, V., Khurana, R., Boora, N., Kapoor, S., and Kapoor, M. (2019). Functional characterization of LIKE HETEROCHROMATIN PROTEIN 1 in the moss Physcomitrella patens: its conserved protein interactions in land plants. Plant J. 97: 221–239.

Rao, G.S., Deveshwar, P., Sharma, M., Kapoor, S., and Rao, K.V. (2018). Evolvement of transgenic male-sterility and fertility-restoration system in rice for production of hybrid varieties. Plant Mol. Biol. 96: 35–51.

Ranjan, R., Khurana, R., Malik, N., Badoni, S., Parida, S.K., Kapoor, S., and Tyagi, A.K. (2017). BHLH142 regulates various metabolic pathway-related genes to affect pollen development and anther dehiscence in rice. Sci. Rep. 7: 43397.

Chawla, M., Verma, V., Kapoor, M., and Kapoor, S. (2017). A novel application of periodic acid–Schiff (PAS) staining and fluorescence imaging for analysing tapetum and microspore development. Histochem. Cell Biol. 147: 103–110.

Borah, P., Sharma, E., Kaur, A., Chandel, G., Mohapatra, T., Kapoor, S., and Khurana, J.P. (2017). Analysis of drought-responsive signalling network in two contrasting rice cultivars using transcriptome-based approach. Sci. Rep. 7: 42131.

Singh, S., Virdi, A.S., Jaswal, R., Chawla, M., Kapoor, S., Mohapatra, S.B., Manoj, N., Pareek, A., Kumar, S., and Singh, P. (2017). A temperature-responsive gene in sorghum encodes a glycine-rich protein that interacts with calmodulin. Biochimie 137: 115–123.

Agarwal, P., Parida, S.K., Raghuvanshi, S., Kapoor, S., Khurana, P., Khurana, J.P., and Tyagi, A.K. (2016). Rice Improvement Through Genome-Based Functional Analysis and Molecular Breeding in India. Rice 9: 1.

Arya, D., Kapoor, S., and Kapoor, M. (2016). Physcomitrella patens DNA methyltransferase 2 is required for recovery from salt and osmotic stress. FEBS J. 283: 556–570.

2011-2015

Kaur, G., Singh, S., Singh, H., Chawla, M., Dutta, T., Kaur, H., Bender, K., Snedden, W.A., Kapoor, S., Pareek, A., and Singh, P. (2015). Characterization of peptidyl-prolyl cis-trans isomerase- and calmodulin-binding activity of a cytosolic Arabidopsis thaliana Cyclophilin AtCyp19-3. PLoS One 10.

Kanwar, P., Sanyal, S.K., Tokas, I., Yadav, A.K., Pandey, A., Kapoor, S., and Pandey, G.K. (2014). Comprehensive structural, interaction and expression analysis of CBL and CIPK complement during abiotic stresses and development in rice. Cell Calcium 56: 81–95.

Sharma, M., Singh, A., Shankar, A., Pandey, A., Baranwal, V., Kapoor, S., Tyagi, A.K., and Pandey, G.K. (2014). Comprehensive expression analysis of rice Armadillo gene family during abiotic stress and development. DNA Res. 21: 267–83.

Dangwal, M., Kapoor, S., and Kapoor, M. (2014). The PpCMT chromomethylase affects cell growth and interacts with the homolog of LIKE HETEROCHROMATIN PROTEIN 1 in the moss Physcomitrella patens. Plant J. 77: 589–603.

Singh, A., Kanwar, P., Yadav, A.K., Mishra, M., Jha, S.K., Baranwal, V., Pandey, A., Kapoor, S., Tyagi, A.K., and Pandey, G.K. (2014). Genome-wide expressional and functional analysis of calcium transport elements during abiotic stress and development in rice. FEBS J. 281: 894–915.

Nayar, S., Kapoor, M., and Kapoor, S. (2014). Post-translational regulation of rice MADS29 function: Homodimerization or binary interactions with other seedexpressed MADS proteins modulate its translocation into the nucleus. J. Exp. Bot. 65: 5339–5350.

Mishra, M., Kanwar, P., Singh, A., Pandey, A., Kapoor, S., and Pandey, G.K. (2013). Plant omics: genome-wide analysis of ABA repressor1 (ABR1) related genes in rice during abiotic stress and development. OMICS 17: 439–50.

Khurana, R., Kapoor, S., and Tyagi, A.K. (2013). Spatial and temporal activity of upstream regulatory regions of rice anther-specific genes in transgenic rice and Arabidopsis. Transgenic Res. 22: 31–46.

Khurana, R., Kathuria, H., Mukhopadhyay, A., Kapoor, S., and Tyagi, A.K. (2013). A 286 bp upstream regulatory region of a rice anther-specific gene, OSIPP3, confers pollen-specific expression in Arabidopsis. Biotechnol. Lett. 35: 455–462.

Nayar, S., Sharma, R., Tyagi, A.K., and Kapoor, S. (2013). Functional delineation of rice MADS29 reveals its role in embryo and endosperm development by affecting hormone homeostasis. J. Exp. Bot. 64: 4239–4253.

Dangwal, M., Malik, G., Kapoor, S., and Kapoor, M. (2013). De novo methyltransferase, OsDRM2, interacts with the ATP-dependent RNA helicase, OseIF4A, in rice. J. Mol. Biol. 425: 2853–2866.

Shankar, A., Singh, A., Kanwar, P., Srivastava, A.K., Pandey, A., Suprasanna, P., Kapoor, S., and Pandey, G.K.(2013). Gene Expression Analysis of Rice Seedling under Potassium Deprivation Reveals Major Changes in Metabolism and Signaling Components. PLoS One 8: 18–21.

Singh, A., Kanwar, P., Pandey, A., Tyagi, A.K., Sopory, S.K., Kapoor, S., and Pandey, G.K. (2013). Comprehensive Genomic Analysis and Expression Profiling of Phospholipase C Gene Family during Abiotic Stresses and Development in Rice. PLoS One 8: 1–14.

Kapoor, S. and Kapoor, M. (2012). Epigenome and Abiotic Stress Tolerance in Plants. In Omics and Plant Abiotic Stress Tolerance, S. Kapoor and M. Kapoor, eds (BENTHAM SCIENCE PUBLISHERS), pp. 121–127.

Kumar, R., Sharma, M.K., Kapoor, S., Tyagi, A.K., and Sharma, A.K. (2012). Transcriptome analysis of rin mutant fruit and in silico analysis of promoters of differentially regulated genes provides insight into LeMADS-RIN-regulated ethylene-dependent as well as ethylene-independent aspects of ripening in tomato. Mol. Genet. Genomics 287: 189–203.

Khurana, R., Kapoor, S., and Tyagi, A.K. (2012). Anthology of Anther/Pollen-Specific Promoters and Transcription Factors. CRC. Crit. Rev. Plant Sci. 31: 359–390.

Malik, G., Dangwal, M., Kapoor, S., and Kapoor, M. (2012). Role of DNA methylation in growth and differentiation in Physcomitrella patens and characterization of cytosine DNA methyltransferases. FEBS J. 279: 4081–4094.

Kumar, S., Karan, R., Kapoor, S., Singh, S.P., and Khare, S.K. (2012). Screening and isolation of halophilic bacteria producing industrially important enzymes. Brazilian J. Microbiol. 43: 1595–1603.

Singh, A., Baranwal, V., Shankar, A., Kanwar, P., Ranjan, R., Yadav, S., Pandey, A., Kapoor, S., and Pandey, G.K.(2012). Rice phospholipase A superfamily: Organization, phylogenetic and expression analysis during abiotic stresses and development. PLoS One 7.

Baranwal, V.K., Mikkilineni, V., Zehr, U.B., Tyagi, A.K., and Kapoor, S. (2012). Heterosis: Emerging ideas about hybrid vigour. J. Exp. Bot. 63: 6309–6314.

Sharma, R. et al. (2012). Expression dynamics of metabolic and regulatory components across stages of panicle and seed development in indica rice. Funct. Integr. Genomics 12: 229–248.

Singh, A., Pandey, A., Baranwal, V., Kapoor, S., and Pandey, G.K. (2012). Comprehensive expression analysis of rice phospholipase D gene family during abiotic stresses and development. Plant Signal. Behav. 7: 847–854.

Ray, S., Kapoor, S., and Tyagi, A.K. (2012). Analysis of transcriptional and upstream regulatory sequence activity of two environmental stress-inducible genes, NBS-Str1 and BLEC-Str8, of rice. Transgenic Res. 21: 351–366.

Agarwal, P., Kapoor, S., and Tyagi, A.K. (2011). Transcription factors regulating the progression of monocot and dicot seed development. BioEssays 33: 189–202.

Mathur, S., Vyas, S., Kapoor, S., and Tyagi, A.K. (2011). The Mediator Complex in Plants: Structure, Phylogeny, and Expression Profiling of Representative Genes in a Dicot (Arabidopsis) and a Monocot (Rice) during Reproduction and Abiotic Stress. PLANT Physiol. 157: 1609–1627.

Ray, S., Dansana, P.K., Giri, J., Deveshwar, P., Arora, R., Agarwal, P., Khurana, J.P., Kapoor, S., and Tyagi, A.K.(2011). Modulation of transcription factor and metabolic pathway genes in response to water-deficit stress in rice. Funct. Integr. Genomics 11: 157–178.

Ram, K., Singh, R.K.M., Kapoor, S., and Khare, S.K. (2011). Gene identification and molecular characterization of solvent stable protease from a moderately haloalkaliphilic bacterium, Geomicrobium sp. EMB2. J. Microbiol. Biotechnol. 21: 129–135.

Crismani, W., Kapoor, S., and Able, J.A. (2011). Comparative transcriptomics reveals 129 transcripts that are temporally regulated during anther development and meiotic progression in both bread wheat (Triticum aestivum) and rice (Oryza sativa). Int. J. Plant Genomics 2011.

Deveshwar, P., Bovill, W.D., Sharma, R., Able, J. a, and Kapoor, S. (2011). Analysis of anther transcriptomes to identify genes contributing to meiosis and male gametophyte development in rice. BMC Plant Biol. 11: 78.

Karan, R., Singh, S.P., Kapoor, S., and Khare, S.K. (2011). A novel organic solvent tolerant protease from a newly isolated Geomicrobium sp. EMB2 (MTCC 10310): Production optimization by response surface methodology. N. Biotechnol. 28: 136–145.

2006-2010

Ray, S., Dansana, P.K., Bhaskar, A., Giri, J., Kapoor, S., Khurana, J.P., and Tyagi, A.K. (2010). Emerging Trends in Functional Genomics for Stress Tolerance in Crop Plants.

Raghuvanshi, S., Kapoor, M., Tyagi, S., Kapoor, S., Khurana, P., Khurana, J., and Tyagi, A. (2010). Rice genomics moves ahead. Mol. Breed. 26: 257–273.

Gaur, R., Grover, T., Sharma, R., Kapoor, S., and Khare, S.K. (2010). Purification and characterization of a solvent stable aminopeptidase from Pseudomonas aeruginosa: Cloning and analysis of aminopeptidase gene conferring solvent stability. Process Biochem. 45: 757–764.

Singh, A., Giri, J., Kapoor, S., Tyagi, A.K., and Pandey, G.K. (2010). Protein phosphatase complement in rice: genome-wide identification and transcriptional analysis under abiotic stress conditions and reproductive development. BMC Genomics 11: 435.

Bovill, W.D., Deveshwar, P., Kapoor, S., and Able, J.A. (2009). Whole genome approaches to identify early meiotic gene candidates in cereals. Funct. Integr. Genomics 9: 219–229.

Sharma, R., Mohan Singh, R.K., Malik, G., Deveshwar, P., Tyagi, A.K., Kapoor, S., and Kapoor, M. (2009). Rice cytosine DNA methyltransferases - Gene expression profiling during reproductive development and abiotic stress. FEBS J. 276: 6301–6311.

Gupta, A., Ray, S., Kapoor, S., and Khare, S.K. (2008). Solvent-stable Pseudomonas aeruginosa PseA protease gene: Identification, molecular characterization, phylogenetic and bioinformatic analysis to study reasons for solvent stability. J. Mol. Microbiol. Biotechnol. 15: 234–243.

Kapoor, M., Arora, R., Lama, T., Nijhawan, A., Khurana, J.P., Tyagi, A.K., and Kapoor, S. (2008). Genome-wide identification, organization and phylogenetic analysis of Dicer-like, Argonaute and RNA-dependent RNA Polymerase gene families and their expression analysis during reproductive development and stress in rice. BMC Genomics 9: 451.

Vij, S., Giri, J., Dansana, P.K., Kapoor, S., and Tyagi, A.K. (2008). The receptor-like cytoplasmic kinase (OsRLCK) gene family in rice: Organization, phylogenetic relationship, and expression during development and stress. Mol. Plant 1: 732–750.

Agarwal, P., Arora, R., Ray, S., Singh, A.K., Singh, V.P., Takatsuji, H., Kapoor, S., and Tyagi, A.K. (2007). Genome-wide identification of C2H2 zinc-finger gene family in rice and their phylogeny and expression analysis. Plant Mol. Biol. 65: 467–485.

Jain, M., Nijhawan, A., Arora, R., Agarwal, P., Ray, S., Sharma, P., Kapoor, S., Tyagi, A.K., and Khurana, J.P.(2007). F-Box Proteins in Rice. Genome-Wide Analysis, Classification, Temporal and Spatial Gene Expression during Panicle and Seed Development, and Regulation by Light and Abiotic Stress. PLANT Physiol. 143: 1467–1483.

Ray, S., Agarwal, P., Arora, R., Kapoor, S., and Tyagi, A.K. (2007). Expression analysis of calcium-dependent protein kinase gene family during reproductive development and abiotic stress conditions in rice (Oryza sativa L. ssp. indica). Mol Genet Genomics 278: 493–505.

Arora, R., Agarwal, P., Ray, S., Singh, A., Singh, V., Tyagi, A.K., and Kapoor, S. (2007). MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8: 242.

Kapoor, S. and Takatsuji, H. (2006). Silencing of an anther-specific zinc-finger gene, MEZ1, causes aberrant meiosis and pollen abortion in petunia. Plant Mol. Biol. 61: 415–430.

Before 2006

Kapoor, S., Kobayashi, A., and Takatsuji, H. (2002). Silencing of the Tapetum-Specific Zinc Finger Gene TAZ1 Causes Premature Degeneration of Tapetum and Pollen Abortion in Petunia. Plant Cell 14: 2353–2367.

Kapoor, S. and Sugiura, M. (1999). Identification of two essential sequence elements in the nonconsensus type II PatpB-290 plastid promoter by using plastid transcription extracts from cultured tobacco BY-2 cells. Plant Cell 11: 1799–810.

Miyagi, T., Kapoor, S., Sugita, M., and Sugiura, M. (1998). Transcript analysis of the tobacco plastid operon rps2/atpI/H/F/A reveals the existence of a non-consensus type II (NCII) promoter upstream of the atpI coding sequence. Mol. Gen. Genet. 257: 299–307.

Kapoor, S., Suzuki, J.Y., and Sugiura, M. (1997). Identification and functional significance of a new class of non-consensus-type plastid promoters. Plant J 11: 327–337.

Kapoor, S., Maheshwari, S.C., and Tyagi, A.K. (1994). Developmental and light-dependent cues interact to establish steady-state levels of transcripts for photosynthesis-related genes. Curr. Genet.: 362–366.

Kapoor, S., Wakasugi, T., Deno, H., and Sugiura, M. (1994). An atpE-specific promoter within the coding region of the atpB gene in tobacco chloroplast DNA. Curr. Genet. 26: 263–268.

Kapoor, S., Maheshwari, S.C., and Tyagi, A.K. (1993). Organ-specific expression of plastid-encoded genes in rice involves both quantitative and qualitative changes in mRNAs. Plant Cell Physiol. 34: 943–947.

 

Book Chapters
 

  1. Agarwal P, Parida S, Kothari KS, Sharma G, Baranwal V, Kapoor S and Tyagi A (2012). Transcriptome resources for functional analysis and genetic enhancement of rice. In Designer Rice, EA Siddiq eds. in press.
    Kapoor S, Khurana R, Baranwal V, Agarwal P, Ray S and Tyagi A (2011). Genome-wide Strategies for Genetic Enhancement of Rice. In Genomics and Crop Improvement: Relevance and Reservations, K. Muralidharan and EA Siddiq eds. PP 11-25.
  2. Kapoor, S., and Kapoor, M. (2011). Epigenome and Abiotic Stress Tolerance in Plants. In Omics and Plant Abiotic Stress Tolerance, N. Tuteja, ed (Sharjah: Bentham Science Publishers Ltd.), pp. In Press.
    Ray S, Dansana PK, Bhaskar A, Giri J, Kapoor S, Khurana JP, and Tyagi AK (2009). Emerging Trends in Functional Genomics for Stress Tolerance in Crop Plants. In Plant Stress Physiology; Hirt H ed. WILEY-VCH Verlag GmbH & Co., Weinheim, pp. 37-63.
  3. Tyagi AK, Khurana JP, Khurana P, Kapoor S, Singh VP, Singh AK, Thakur JK, Gupta S, Anand S, Vij S, Jain M, Ray S, Agarwal P, Arora R, Sharma P, Mukherjee S, Nijhawan A, Giri J, Khurana R. (2006) Expression and functional analysis of rice genes involved in reproductive development and stress response. In Rice Genetics V, IRRI, Philippines. pp. 313-330.
  4. Kapoor S., Sugita M. and Sugiura M. (2002). In vitro Characterization of Plastid NCII promoter elements By Using Plastid Transcription Extracts From Tobacco BY-2 Cultured Cells. In. Molecular Insight in Plant Biology; Nath P. et al. Eds. Oxford & IBH Publishing Co. New Delhi. pp 81-91.
  5. Tyagi AK, Grover M, Chaudhury A, Kapoor S, Kelkar NY & Maheshwari SC. (1997)  Influence of light and development on expression of genes encoding photosynthesis-related proteins. In: Tewari KK & Singhal GS (eds), Plant Molecular Biology and Biotechnology pp. 101-114, Narosa Pub. House, New Delhi.
  6. Kapoor S. and Sugiura M. (1996) Expression and regulation of plastid genes. In Photosynthesis: A Comprehensive Treatise; Raghavendra A.S. ed. Cambridge Univ. Press, Cambridge UK. pp. 72-86.
  7. Tyagi A.K., Grover M., Chaudhury A., Kapoor S., Kelkar N.Y., and Maheshwari S.C. (1995). Influence of light and development on expression of genes encoding photosynthesis-related proteins. In. Plant Mol. Biol. and Biotech.; Tewari K.K. and Singhal G.S. eds. Kluwer Acad. Pub. Dordrecht. pp. 101-114.
  8. Tyagi A.K., Kelkar N.Y., Kapoor S. and Maheshwari S.C. (1993). The chloroplast genome: genetic potential and its expression. In Photosynthesis: Photoreaction to Plant Productivity; Abrol Y.P., Mohanty P. and Govindjee eds. Kluwer Acad. Pub. Dordrecht. pp. 3-47.
  9. Tyagi AK, Kelkar NY, Kapoor S, Oelmuller R, Herrmann RG, Grover M, Kochhar A, Chaudhury A, Khurana JP & Maheshwari SC. (1993) Expression of genes encoding thylakoid membrane protein as influenced by light and development. In: Lodha S, Mehta SL, Ramagopal S & Srivastava GP (eds), Advances in Plant Biotechnology and Biochemistry pp. 1-7, ISAB, India.
  10. Kapoor S., Maheshwari S.C. and Tyagi A.K. (1991). Cloning of chloroplast DNA and localization of the genes for thylakoid proteins in indica rice In. Trends in Bioenergetics and Biotechnological processes; Singhal G.S. and Ramasarna T. eds. Today and Tomorrow Pub. New Delhi pp. 66-73.
  11. Tyagi A.K., Kelkar N.Y., Kapoor S. and Maheshwari S.C. (1988). Genes of the photosynthetic apparatus of higher plants—structure, expression and strategies for their engineering. In Photosynthesis: Molecular Biology and Bioenergetics; Singhal G.S., Barber J., Dilley, R.A., Govindjee, Haselkorn, R. and Mohanty, P. eds. Springer-Verlag, Berlin. pp. 3-20.
Previous page: Research Projects Next page: Expression Datasets